Flexible web-based integration of distributed large-scale human protein interaction maps

Protein-protein interactions constitute the backbone of many molecular processes. This has motivated the recent construction of several large-scale human protein-protein interaction maps [1-10]. Although these maps clearly offer a wealth of information, their use is challenging: complexity, rapid growth, and fragmentation of interaction data hamper their usability. To overcome these hurdles, we have developed a publicly accessible database termed UniHI (Unified Human Interactome) for integration of human protein-protein interaction data. This database is designed to provide biomedical researchers a common platform for exploring previously disconnected human interaction maps. UniHI offers researchers flexible integrated tools for accessing comprehensive information about the human interactome. Several features included in the UniHI allow users to perform various types of network-oriented and functional analysis. At present, UniHI contains over 160,000 distinct interactions between 17,000 unique proteins from ten major interaction maps derived by both computational and experimental approaches [1-10]. Here we describe the details of the implementation and maintenance of UniHI and discuss the challenges that have to be addressed for a successful integration of interaction data

Enhancement of keV X-rays from low-density cellulose triacetate (TAC) foam targets

The interaction of a high-power laser with a low-density foam target can in some instances result in a significant enhancement in x-ray generation relative to that when the same laser is incident upon a homogenous solid. In this paper, we present x-ray emission studies from foam targets where the density is varied from under-dense to over-dense. The targets are irradiated with the first harmonic of Nd:Glass laser. The laser intensity on the target was approximately 2 × 1014 W/cm2 with the pulse duration of 500 ps. Mass-matched cellulose triacetate foam targets with densities of 2 mg/cc, 4 mg/cc, 7 mg/cc, and 20 mg/cc were used. The areal density presented by the targets on the laser beam axis was held constant at 0.2 mg/cm2 by varying the target thickness in inverse proportion to the density. The x-ray yield in the spectral range (5-8 keV) and (4.5-16 keV) was found to be enhanced by approximately 2.3 times in foam targets with the density of 2 mg/cc (under-dense) compared with foam targets with the density of 20 mg/cc (over-dense)

Simulation & Performance Analysis of Stand-by Distributed Generation System

The engineering fraternity faces the formidable challenge to cope with the exponential rise of energy demand simultaneously with the depleting reserves of fuel and environmental issues. With the development in technology and the rising demand for supply of electricity, diesel-based power generation is being used as a standby or emergency to feed this demand and at the time of unavailability of other sources. In case of emergency or as a backup system diesel-based power generation is considered in this thesis. A simulation model of diesel engine along with governor and exciter unit is developed in MATLAB/SIMULINK. The simulation performance is analyzed for different operating conditions with various resistive, inductive and capacitive loads. The exhaustive simulation results show the good dynamic and transient performance with voltage and frequency. The parameters of the machine are selected to achieve the desired electrical supply with a controlled voltage and frequency for 10%-80% loading conditions. The controller parameters (such as time constants, gains and coefficients) of the governor and automatic voltage regulator (AVR) are selected and tuned for a good transient and steady-state performance. The simulation results show a satisfactory performance in terms of efficiency, generated voltage, generator speed and frequency.y

Multienzymatic immobilization of laccases on polymeric microspheres:A strategy to expand the maximum catalytic efficiency

Laccase enzymes of were covalently coimmobilized on poly(glycidyl methacrylate) microspheres. The objective of this work was to create a biocatalyst that works efficiently in a wide range of pH. The coimmobilization was performed using two different strategies to compare the most efficient. The results showed that by correctly selecting the enzymes and concentrations involved in the commobilization, it is possible to obtain a biocatalyst that works efficiently at a wide pH range (2.0-7.0). The maximum activity values reached per gram of support for the obtained biocatalyst were 41.90 U (pH 3.0), 40.89 U (pH 4.0), and 39.54 U (pH 6.0). Moreover, the thermal, storage, and mechanical stabilities were improved compared to the free and single-immobilized laccases. It was concluded that enzymatic coimmobilization is an excellent alternative to obtain a robust biocatalyst that works in a wide pH range, with potential environmental and industrial applications

Identifying behavioural characteristics of tobacco product and e-cigarette use clusters: A repeat cross-sectional analysis

The final publication is available at Elsevier via https://dx.doi.org/10.1016/j.addbeh.2018.10.026 © 2019. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/Background Youth may use a variety of tobacco products and e-cigarettes. However, there is a lack of evidence for the combinations of tobacco products and e-cigarettes commonly used by youth in Canada and whether youth from different usage classes share similar characteristics. Methods A cohort of 9th grade students from Ontario, Canada was identified at baseline (2013–14) of the COMPASS study (n = 4651). Classes of youth that currently use similar combinations of tobacco products and e-cigarettes were identified at baseline, one (FY1) and two years later (FY2) using latent class analysis. Multinomial logistic regression models identified demographic and behavioural characteristics (e.g., environmental influences, substance use behaviours, etc.) of youth in current tobacco and e-cigarette use classes relative to youth in non-current use classes. Results At baseline, a three-class model was identified as best, while a four-class model was identified at FY1 and FY2. A non-current use group and an all-product use group were identified every year. Students that reported having friends that smoked cigarettes, binge drinking, and using marijuana were more likely to be classified into a current use class. Conclusions Tobacco cigarettes were more likely to be used with other products than on their own. An all-product use group was identified across all three survey waves and the prevalence of this group increased over time. Given that many youth in this study used more than one tobacco product or e-cigarette and commonly reported binge drinking and using marijuana, prevention and cessation activities should address the use of multiple products.Canadian Institutes of Health Research ["GSD-140312","OOP-110788, MOP-114875"]Public Health Agency of Canada in partnership with Canadian Institutes of Health Research",[]

First occurrence of foot rot of chickpea caused by Operculella padwickii in Bangladesh and Nepal

hile conducting diagnostic surveys in March 1999 to determine the chickpea disease prevalence in the rice-wheat cropping systems of Bangladesh and Nepal, a new disease of chickpea showing symptoms of foot rot (O. padwickii [Phacidiopycnis padwickii]) was observed. Dark brown to black sunken lesions on cotyledons and collar region of the plant were observed. Later, the lesions enlarged, became sunken, dark brown to black, extending to the epicotyl and basal tap root of the plant. In advanced stages of disease development, a complete girdling of the plant in the collar region took place, resulting in the wilting and death of the plants. Leaves were pale green and finally became straw-coloured. In culture, the fungus produced white mycelium and pycnidia. Long and short conidiophores were observed. The pathogen was confirmed as O. padwickii. Pathogenicity tests were conducted and the pathogen was reisolated from the infected plants. This is thought to be the first report of O. padwickii on chickpea in Bangladesh and Nepal

Dynamic circadian protein-protein interaction networks predict temporal organization of cellular functions.

Essentially all biological processes depend on protein-protein interactions (PPIs). Timing of such interactions is crucial for regulatory function. Although circadian (~24-hour) clocks constitute fundamental cellular timing mechanisms regulating important physiological processes, PPI dynamics on this timescale are largely unknown. Here, we identified 109 novel PPIs among circadian clock proteins via a yeast-two-hybrid approach. Among them, the interaction of protein phosphatase 1 and CLOCK/BMAL1 was found to result in BMAL1 destabilization. We constructed a dynamic circadian PPI network predicting the PPI timing using circadian expression data. Systematic circadian phenotyping (RNAi and overexpression) suggests a crucial role for components involved in dynamic interactions. Systems analysis of a global dynamic network in liver revealed that interacting proteins are expressed at similar times likely to restrict regulatory interactions to specific phases. Moreover, we predict that circadian PPIs dynamically connect many important cellular processes (signal transduction, cell cycle, etc.) contributing to temporal organization of cellular physiology in an unprecedented manner

Exploration of two methods for quantitative Mitomycin C measurement in tumor tissue in vitro and in vivo

Two methods of quantifying Mitomycin C in tumor tissue are explored. A method of ultraviolet-visible absorption microscopy is developed and applied to measure the concentration of Mitomycin C in preserved mouse tumor tissue, as well as in gelatin samples. Concentrations as low as 60 μM can be resolved using this technique in samples that do not strongly scatter light. A novel method for monitoring the Mitomycin C concentrations inside a tumor is developed, based on microdialysis and ultraviolet-visible spectroscopy. A pump is used to perfuse a microdialysis probe with Ringer’s solution, which is fed to a flow cell to determine intratumor concentrations in real time to within a few μM. The success and limitations of these techniques are identified, and suggestions are made as to further development. To the authors’ knowledge these are the first attempts made to quantify Mitomycin C concentrations in tumor tissue